Welcome to kindred documentation!


PubRunner is a framework for rerunning text mining tools on the latest publications. It follows the four steps outlined below.

  1. Download the corpus to be mined (such as PubMed or PMC) and any additional corpora needed
  2. Execute the text mining tool using the corpora
  3. Upload the output of the text mining tool to an appropriate location
  4. Update the


Settings Stuff

Depending on usage, PubRunner may need settings for the following things

  • FTP username, etc
  • Zenodo authentication token
  • Where datasets already are
  • Other settings that I haven’t thought of yet